PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0071ss00480.1
Common NameLR48_Vigan192s001500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 390aa    MW: 42867.1 Da    PI: 6.9944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0071ss00480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08274322348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Vang0071ss00480.1 274 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 322
                        7**************************99999*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948267326IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-11269325IPR009057Homeodomain-like
SuperFamilySSF466895.06E-15269327IPR009057Homeodomain-like
SMARTSM007178.8E-8271324IPR001005SANT/Myb domain
CDDcd116602.07E-19273323No hitNo description
PfamPF002491.2E-5274322IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
METVVGIEDN DDGKFEDSGL DRSSSALSSP KQISNPIVYK LVRVEGDGRL VPATDDEVME  60
VGDFLEYENS EMHVVADTGQ SLECISIERS SSGKLRLECS EGSTEADLGK LNAKLQSRCG  120
GSEMYSQVLP ARNTFSEVRT CGTRFASLGG SDVEIPCVSW IRRSRPRKDM XSLMKFHPSA  180
MSETEKLSNK LIEHSSDAVG EIPDKVFKSR MPATFHQPSS SEPEKEKQCP VIATIEPRQE  240
LRPKRADPPG HTSDDNIVTV PTAKGGMRRK HHRAWTLVEV IKLVEGVSRC GAGRWSEIKR  300
LSFASYSYRT SVDLKDKWRN LLKASFAMTP APSDEGINSR KHGTAPIPEK ILLRVRELAE  360
MNSQVPPNIS SNKVAAGGGS VHEDRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167RRSRPRK
2161168RRSRPRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516355.10.0PREDICTED: uncharacterized protein LOC106774054 isoform X4
TrEMBLA0A0L9T5F80.0A0A0L9T5F8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SZK50.0A0A0S3SZK5_PHAAN; Uncharacterized protein
STRINGGLYMA07G04160.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-56TRF-like 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]